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1

Implementing the FAIR Data Principles in precision oncology: review of supporting initiatives

Vesteghem, Charles, Brøndum, Rasmus Froberg, Sønderkær, Mads, Sommer, Mia, Schmitz, Alexander, Bødker, Julie Støve, Dybkær, Karen, El-Galaly, Tarec Christoffer, Bøgsted, Martin

Journal:

Briefings in Bioinformatics

Year:

2019

Language:

english

File:

PDF, 517 KB

english, 2019

2

[IEEE 2007 IEEE 18th International Symposium on Personal, Indoor and Mobile Radio Communications - Athens, Greece (2007.09.3-2007.09.7)] 2007 IEEE 18th International Symposium on Personal, Indoor and Mobile Radio Communications - Adaptive Caching Strategies for Context Management Systems

Schwefel, Hans-Peter, Hansen, Martin Bogsted, Olsen, Rasmus L.

Year:

2007

Language:

english

File:

PDF, 204 KB

english, 2007

3

A Proteome Analysis of Rheumatoid Arthritis Gut Mucosa

Bennike, Tue Bjerg, Ellingsen, Torkell, Glerup, Henning, Bonderup, Ole Kristian, Carlsen, Thomas Gelsing, Meyer, Michael Kruse Kruse, Bøgsted, Martin, Christiansen, Gunna, Birkelund, Svend, Andersen,

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

4

A systematic review of molecular responses to cancer therapy in normal human mucosa

Marcussen, Mette, Skrubbeltrang, Conni, Bødker, Julie Støve, Christiansen, Ilse, Bøgsted, Martin, Dybkær, Karen, Bergmann, Olav Jonas, Johnsen, Hans Erik

Journal:

Oral Surgery Oral Medicine Oral Pathology and Oral Radiology

Year:

2017

Language:

english

File:

PDF, 926 KB

english, 2017

5

Proof of the Concept to Use a Malignant B Cell Line Drug Screen Strategy for Identification and Weight of Melphalan Resistance Genes in Multiple Myeloma

Bøgsted, Martin, Bilgrau, Anders E., Wardell, Christopher P., Bertsch, Uta, Schmitz, Alexander, Bødker, Julie S., Kjeldsen, Malene K., Goldschmidt, Hartmut, Morgan, Gareth J., Dybkaer, Karen, Johnsen,

Journal:

Year:

2013

Language:

english

File:

PDF, 590 KB

english, 2013

6

Normal Value Ranges for Central Retinal Thickness Asymmetry in Healthy Caucasian Adults Measured by SPECTRALIS SD-OCT Posterior Pole Asymmetry Analysis

Jacobsen, Agnes Galbo, Bendtsen, Mette Dahl, Vorum, Henrik, Bøgsted, Martin, Hargitai, Janos

Journal:

Investigative Opthalmology & Visual Science

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

7

Limited value of routine follow-up visits in chronic lymphocytic leukemia managed initially by watch and wait: A North Denmark population-based study

Nørgaard, Caroline Holm, Søgaard, Nikoline Buus, Biccler, Jorne Lionel, Pilgaard, Laura, Eskesen, Mathias Holmsgaard, Kjartansdottir, Thordis Helga, Bøgsted, Martin, El-Galaly, Tarec Christoffer, Rai,

Journal:

Year:

2018

Language:

english

File:

PDF, 718 KB

english, 2018

8

Exploring the dietary protein intake and skeletal muscle during first-line anti-neoplastic treatment in patients with non-small cell lung cancer

Tobberup, Randi, Rasmussen, Henrik H., Holst, Mette, Jensen, Nikolaj A., Falkmer, Ursula G., Bøgsted, Martin, Delekta, Agnieszka M., Carus, Andreas

Journal:

Clinical Nutrition ESPEN

Year:

2019

Language:

english

File:

PDF, 359 KB

english, 2019

9

Multiparametric flow cytometry profiling of neoplastic plasma cells in multiple myeloma

Hans E. Johnsen, Martin Bøgsted, Tobias W. Klausen, Peter Gimsing, Alexander Schmitz, Erik Kjærsgaard, Tina Damgaard, Pia Voss, Lene M. Knudsen, Anne K. Mylin, Johan Lanng Nielsen, Bo Björkstrand, Ast

Journal:

Cytometry Part B: Clinical Cytometry

Year:

2010

Language:

english

File:

PDF, 514 KB

english, 2010

10

Probabilistic models for access strategies to dynamic information elements

Martin Bøgsted, Rasmus L. Olsen, Hans-Peter Schwefel

Journal:

Performance Evaluation

Year:

2010

Language:

english

File:

PDF, 1.18 MB

english, 2010

11

MULTISCAN - A Scandinavian multicenter second trimester obstetric ultrasound and serum screening study

Finn Stener Jørgensen, Lil Valentin, KjellÅ. Salvesen, Connie Jørgensen, Flemming R. Jensen, Jens Bang, Sturla H. Eik-Nes, Mette Madsen, Karel Marsal, Per-Håkan Persson, John Philip, Jeanette W. Bogst

Journal:

Acta Obstetricia et Gynecologica Scandinavica

Year:

1999

Language:

english

File:

PDF, 115 KB

english, 1999

12

Decompounding random sums: a nonparametric approach

Martin Bøgsted, Susan M. Pitts

Journal:

Annals of the Institute of Statistical Mathematics

Year:

2010

Language:

english

File:

PDF, 338 KB

english, 2010

13

600 Agreement Between SNP6.0 and Cytogenetic 2.7M Whole-genome Microarrays From Affymetrix in DLBCL

J. Bodker, P. Johansen, C. Gyrup, A. Schmitz, P. Jensen, H. Johnsen, M. Bogsted, K. Dybkr, M. Nyegaard

Journal:

European Journal of Cancer

Year:

2012

Language:

english

File:

PDF, 58 KB

english, 2012

14

Routine Bone Marrow Biopsy Has Little or No Therapeutic Consequence for Positron Emission Tomography/Computed Tomography-Staged Treatment-Naive Patients With Hodgkin Lymphoma

El-Galaly, T. C., d'Amore, F., Mylam, K. J., de Nully Brown, P., Bogsted, M., Bukh, A., Specht, L., Loft, A., Iyer, V., Hjorthaug, K., Nielsen, A. L., Christiansen, I., Madsen, C., Johnsen, H.-E., Hut

Journal:

Journal of Clinical Oncology

Year:

2012

Language:

english

File:

PDF, 172 KB

english, 2012

15

B551 A Novel Chemosensitivity Index for Chemotherapy Correlates to Resistance and Refractoriness

Johnsen, HE, Sonneveld, P, Duin, MV, Knudsen, S, Dahlgaard, J, Bøgsted, M, Hoejfeldt, AD, Dybkaer, K, Jensen, AM

Journal:

Clinical Lymphoma & Myeloma

Year:

2009

Language:

english

File:

PDF, 84 KB

english, 2009

16

Role of routine imaging in detecting recurrent lymphoma: A review of 258 patients with relapsed aggressive non-Hodgkin and Hodgkin lymphoma

El-Galaly, TC, Mylam, Karen Juul, Bøgsted, Martin, Brown, Peter, Rossing, Maria, Gang, Anne Ortved, Haglund, Anne, Arboe, Bente, Clausen, Michael Roost, Jensen, Paw, Pedersen, Michael, Bukh, Anne, Jen

Journal:

American Journal of Hematology

Year:

2014

Language:

english

File:

PDF, 403 KB

english, 2014

17

Bayes Type Estimators for the Empty Space Function

Martin Bøgsted Hansen

Journal:

Advances in Applied Probability

Year:

1996

Language:

english

File:

PDF, 199 KB

english, 1996

18

Exposure time independent summary statistics for assessment of drug dependent cell line growth inhibition

Falgreen, Steffen, Laursen, Maria Bach, Bødker, Julie Støve, Kjeldsen, Malene Krag, Schmitz, Alexander, Nyegaard, Mette, Johnsen, Hans Erik, Dybkær, Karen, Bøgsted, Martin

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.12 MB

english, 2014

19

Validation and implementation of a method for microarray gene expression profiling of minor B-cell subpopulations in man

Bergkvist, Kim, Nyegaard, Mette, Bøgsted, Martin, Schmitz, Alexander, Bødker, Julie, Rasmussen, Simon, Perez-Andres, Martin, Falgreen, Steffen, Bilgrau, Anders, Kjeldsen, Malene, Gaihede, Michael, Nør

Journal:

Year:

2014

Language:

english

File:

PDF, 365 KB

english, 2014

20

409: Transcription factors with differential transcription start sites during B-cell differentiation in normal tissues and diffuse large B-cell lymphoma

Bødker, J., Kjeldsen, M.K., Kloster, M.B., Rodrigo-Domingo, M., Bilgrau, A.E., Johansen, P., Schmitz, A., Johnsen, H.E., Bøgsted, M., Dybkær, K.

Journal:

European Journal of Cancer

Year:

2014

Language:

english

File:

PDF, 76 KB

english, 2014

21

Human B-cell cancer cell lines as a preclinical model for studies of drug effect in diffuse large B-cell lymphoma and multiple myeloma

Laursen, Maria Bach, Falgreen, Steffen, Bødker, Julie Støve, Schmitz, Alexander, Kjeldsen, Malene Krag, Sørensen, Suzette, Madsen, Jakob, El-Galaly, Tarec Christoffer, Bøgsted, Martin, Dybkær, Karen,

Journal:

Experimental Hematology

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

22

Performance Comparison of Affymetrix SNP6.0 and Cytogenetic 2.7M Whole-Genome Microarrays in Complex Cancer Samples

Bødker, J.S., Gyrup, C., Johansen, P., Schmitz, A., Madsen, J., Johnsen, H.E., Bøgsted, M., Dybkær, K., Nyegaard, M.

Journal:

Cytogenetic and Genome Research

Year:

2013

Language:

english

File:

PDF, 378 KB

english, 2013

23

Statistical model checking for biological systems

David, Alexandre, Larsen, Kim G., Legay, Axel, Mikučionis, Marius, Poulsen, Danny Bøgsted, Sedwards, Sean

Journal:

International Journal on Software Tools for Technology Transfer (STTT)

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

24

CRPgenotype and haplotype associations with serum C-reactive protein level and DAS28 in untreated early rheumatoid arthritis patients

Ammitzbøll, Christian Gytz, Steffensen, Rudi, Bøgsted, Martin, Hørslev-Petersen, Kim, Hetland, Merete L, Junker, Peter, Johansen, Julia S, Pødenphant, Jan, Østergaard, Mikkel, Ellingsen, Torkell, Sten

Journal:

Arthritis Research & Therapy

Year:

2014

Language:

english

File:

PDF, 320 KB

english, 2014

25

UppaalSMC tutorial

David, Alexandre, Larsen, Kim G., Legay, Axel, Mikučionis, Marius, Poulsen, Danny Bøgsted

Journal:

International Journal on Software Tools for Technology Transfer (STTT)

Year:

2015

Language:

english

File:

PDF, 2.62 MB

english, 2015

26

Diffuse Large B-Cell Lymphoma Classification System That Associates Normal B-Cell Subset Phenotypes With Prognosis

Dybkaer, K., Bogsted, M., Falgreen, S., Bodker, J. S., Kjeldsen, M. K., Schmitz, A., Bilgrau, A. E., Xu-Monette, Z. Y., Li, L., Bergkvist, K. S., Laursen, M. B., Rodrigo-Domingo, M., Marques, S. C., R

Journal:

Journal of Clinical Oncology

Year:

2015

Language:

english

File:

PDF, 1.34 MB

english, 2015

27

Reproducible probe-level analysis of the Affymetrix Exon 1.0 ST array with R/Bioconductor

Rodrigo-Domingo, M., Waagepetersen, R., Bodker, J. S., Falgreen, S., Kjeldsen, M. K., Johnsen, H. E., Dybkaer, K., Bogsted, M.

Journal:

Briefings in Bioinformatics

Year:

2014

Language:

english

File:

PDF, 590 KB

english, 2014

28

Circulating tumor necrosis factor-α and YKL-40 level is associated with remission status following salvage therapy in relapsed non-Hodgkin lymphoma

El-Galaly, Tarec C., Bilgrau, Anders E., Gaarsdal, Eva, Klausen, Tobias W., Pedersen, Lars M., Nielsen, Kaspar R., Bæch, John, Bøgsted, Martin, Dybkær, Karen, Johansen, Julia S., Johnsen, Hans E.

Journal:

Leukemia and Lymphoma

Year:

2015

Language:

english

File:

PDF, 149 KB

english, 2015

29

[IEEE 2014 14th International Conference on Application of Concurrency to System Design - Tunis La Marsa, Tunisia (2014.6.23-2014.6.27)] 2014 14th International Conference on Application of Concurrency to System Design - Quantified Dynamic Metric Temporal Logic for Dynamic Networks of Stochastic Hybrid Automata

David, Alexandre, Larsen, Kim G., Legay, Axel, Li, Guangyuan, Poulsen, Danny Bogsted

Year:

2014

Language:

english

File:

PDF, 380 KB

english, 2014

30

Routine Imaging for Diffuse Large B-Cell Lymphoma in First Complete Remission Does Not Improve Post-Treatment Survival: A Danish-Swedish Population-Based Study

El-Galaly, T. C., Jakobsen, L. H., Hutchings, M., de Nully Brown, P., Nilsson-Ehle, H., Szekely, E., Mylam, K. J., Hjalmar, V., Johnsen, H. E., Bogsted, M., Jerkeman, M.

Journal:

Journal of Clinical Oncology

Year:

2015

Language:

english

File:

PDF, 230 KB

english, 2015

31

The Application of Human Phase 0 Microdosing Trials – a Systematic Review and Perspectives

Svendsen, Pernille, El-Galaly, Tarec C., Dybkær, Karen, Bøgsted, Martin, Laursen, Maria B., Schmitz, Alexander, Jensen, Paw, Johnsen, Hans E.

Journal:

Leukemia and Lymphoma

Year:

2015

Language:

english

File:

PDF, 870 KB

english, 2015

32

Inherited variation in immune response genes in follicular lymphoma and diffuse large B-cell lymphoma

Nielsen, Kaspar Rene, Steffensen, Rudi, Haunstrup, Thure Mors, Bødker, Julie Støve, Dybkær, Karen, Baech, John, Bøgsted, Martin, Johnsen, Hans Erik

Journal:

Leukemia and Lymphoma

Year:

2015

Language:

english

File:

PDF, 1.08 MB

english, 2015

33

Neutrophil Extracellular Traps in Ulcerative Colitis

Bennike, Tue Bjerg, Carlsen, Thomas Gelsing, Ellingsen, Torkell, Bonderup, Ole Kristian, Glerup, Henning, Bøgsted, Martin, Christiansen, Gunna, Birkelund, Svend, Stensballe, Allan, Andersen, Vibeke

Journal:

Inflammatory Bowel Diseases

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

34

To maintain or not, that is the question

Jensen, Paw, Bendtsen, Mette D., Johnsen, Hans E., Bøgsted, Martin, El-Galaly, Tarec C.

Journal:

British Journal of Haematology

Year:

2015

Language:

english

File:

PDF, 54 KB

english, 2015

35

Blood on the tracks – toward precision medicine

Johnsen, Hans E., El-Galaly, Tarec C., Dybkær, Karen, Bøgsted, Martin

Journal:

Leukemia and Lymphoma

Year:

2016

Language:

english

File:

PDF, 522 KB

english, 2016

36

Unaccounted uncertainty from qPCR efficiency estimates entails uncontrolled false positive rates

Bilgrau, Anders E., Falgreen, Steffen, Petersen, Anders, Kjeldsen, Malene K., Bødker, Julie S., Johnsen, Hans E., Dybkær, Karen, Bøgsted, Martin

Journal:

BMC Bioinformatics

Year:

2016

Language:

english

File:

PDF, 729 KB

english, 2016

37

Incidence of venous thromboembolism in patients with diffuse large B-cell lymphoma

Borg, Ina Hornemann, Bendtsen, Mette Dahl, Bøgsted, Martin, Madsen, Jakob, Severinsen, Marianne Tang

Journal:

Leukemia and Lymphoma

Year:

2016

Language:

english

File:

PDF, 826 KB

english, 2016

38

Multiplex polymerase chain reaction-based prognostic models in diffuse large B-cell lymphoma patients treated with R-CHOP

Green, Tina M., Jensen, Andreas K., Holst, René, Falgreen, Steffen, Bøgsted, Martin, de Stricker, Karin, Plesner, Torben, Mourits-Andersen, Torben, Frederiksen, Mikael, Johnsen, Hans E., Pedersen, Lar

Journal:

British Journal of Haematology

Year:

2016

Language:

english

File:

PDF, 419 KB

english, 2016

39

No survival benefit associated with routine surveillance imaging for Hodgkin lymphoma in first remission: a Danish-Swedish population-based observational study

Jakobsen, Lasse H., Hutchings, Martin, de Nully Brown, Peter, Linderoth, Johan, Mylam, Karen J., Molin, Daniel, Johnsen, Hans E., Bøgsted, Martin, Jerkeman, Mats, El-Galaly, Tarec C.

Journal:

British Journal of Haematology

Year:

2016

Language:

english

File:

PDF, 206 KB

english, 2016

40

Utility of interim and end-of-treatment PET/CT in peripheral T-cell lymphomas: A review of 124 patients

El-Galaly, Tarec Christoffer, Pedersen, Martin Bjerregård, Hutchings, Martin, Mylam, Karen Juul, Madsen, Jakob, Gang, Anne Ortved, Bøgsted, Martin, de Nully Brown, Peter, Loft, Annika, Nielsen, Anne L

Journal:

American Journal of Hematology

Year:

2015

Language:

english

File:

PDF, 548 KB

english, 2015

41

Retinal proteome changes following experimental branch retinal vein occlusion and intervention with Ranibizumab

Cehofski, Lasse Jørgensen, Kruse, Anders, Bøgsted, Martin, Magnusdottir, Sigriður Olga, Stensballe, Allan, Honoré, Bent, Vorum, Henrik

Journal:

Experimental Eye Research

Year:

2016

Language:

english

File:

PDF, 19.81 MB

english, 2016

42

The myeloma stem cell concept, revisited: from phenomenology to operational terms

Johnsen, H. E., Bogsted, M., Schmitz, A., Bodker, J. S., El-Galaly, T. C., Johansen, P., Valent, P., Zojer, N., Van Valckenborgh, E., Vanderkerken, K., van Duin, M., Sonneveld, P., Perez-Andres, M., O

Journal:

Year:

2016

Language:

english

File:

PDF, 1.16 MB

english, 2016

43

The Prevalence of Oropharyngeal Dysphagia in Danish Patients Hospitalised with Community-Acquired Pneumonia

Melgaard, Dorte, Baandrup, Ulrik, Bøgsted, Martin, Bendtsen, Mette Dahl, Hansen, Tina

Journal:

Year:

2017

Language:

english

File:

PDF, 427 KB

english, 2017

44

Minimal Loss of Lifetime for Patients With Diffuse Large B-Cell Lymphoma in Remission and Event Free 24 Months After Treatment: A Danish Population-Based Study

Jakobsen, Lasse Hjort, Bøgsted, Martin, Brown, Peter de Nully, Arboe, Bente, Jørgensen, Judit, Larsen, Thomas Stauffer, Juul, Maja Bech, Schurmann, Lene, Højberg, Linda, Bergmann, Olav Jonas, Lassen,

Journal:

Journal of Clinical Oncology

Year:

2017

Language:

english

File:

PDF, 732 KB

english, 2017

45

Outcome of peripheral T-cell lymphoma in first complete remission: a Danish-Swedish population-based study

Cederleuf, Henrik, Hjort Jakobsen, Lasse, Ellin, Fredrik, de Nully Brown, Peter, Stauffer Larsen, Thomas, Bøgsted, Martin, Relander, Thomas, Jerkeman, Mats, El-Galaly, Tarec Christoffer

Journal:

Leukemia and Lymphoma

Year:

2017

Language:

english

File:

PDF, 1.39 MB

english, 2017

46

MORTALITY RATES REMAIN INCREASED IN YOUNG PATIENTS WITH CLASSICAL HODGKIN LYMPHOMA EVEN AFTER YEARS IN REMISSION: RESULTS FROM A NORDIC LYMPHOMA GROUP STUDY

Biccler, J., Glimelius, I., Eloranta, S., de Nully Brown, P., Jakobsen, L.H., Frederiksen, H., Jerkeman, M., Bøgsted, M.

Journal:

Hematological Oncology

Year:

2017

Language:

english

File:

PDF, 87 KB

english, 2017

47

Visual versus metabolic tumour volume assessments as predictors for outcome in patients with diffuse large B-cell lymphoma: A single site retrospective study in 118 patients

Gormsen, L.C., Brøndum, R.F., Haraldsen, A., Bogsrud, T.V., Hjorthaug, K., Vendelbo, M.H., Bøgsted, M., Nielsen, A.L., Petersen, L.J., Juul-Jensen, K., El-Galaly, T.C.

Journal:

Hematological Oncology

Year:

2017

Language:

english

File:

PDF, 83 KB

english, 2017

48

OUTCOME PREDICTION IN DIFFUSE LARGE B-CELL LYMPHOMA CAN BE GREATLY IMPROVED BY ALTERNATIVE USE OF CLINICAL INFORMATION: A NORDIC LYMPHOMA GROUP STUDY

Biccler, J.L., Eloranta, S., de Nully Brown, P., Frederiksen, H., Jerkeman, M., Smedby, K.E., Bøgsted, M., El-Galaly, T.C.

Journal:

Hematological Oncology

Year:

2017

Language:

english

File:

PDF, 275 KB

english, 2017

49

AB0001 Genotype and Haplotype Effects of 7 Single-Nucleotide Polymorphisms in the CRP Gene on Levels of C-Reactive Protein and DAS28 in Two Cohorts of Treatment NaÏVe, Recent Onset Rheumatoid Arthritis Patients

Ammitzbøll, C.G., Steffensen, R., Bøgsted, M., Hørslev-Petersen, K., Hetland, M.L., Junker, P., Pødenphant, J., Østergaard, M., Ellingsen, T., Johansen, J., Stengaard-Pedersen, K.

Journal:

Annals of the Rheumatic Diseases

Year:

2014

Language:

english

File:

PDF, 70 KB

english, 2014

50

Proteomics dataset: The colon mucosa from inflammatory bowel disease patients, gastrointestinal asymptomic rheumatoid arthritis patients, and controls

Bennike, Tue Bjerg, Carlsen, Thomas Gelsing, Ellingsen, Torkell, Bonderup, Ole Kristian, Glerup, Henning, Bøgsted, Martin, Christiansen, Gunna, Birkelund, Svend, Andersen, Vibeke, Stensballe, Allan

Journal:

Year:

2017

Language:

english

File:

PDF, 181 KB

english, 2017

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